Titlebook: Data Integration in the Life Sciences; Third International Ulf Leser,Felix Naumann,Barbara Eckman Conference proceedings 2006 Springer-Ver

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SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacoge description into an HGVS-compliant pivot description and vice versa. Used in the frame of a knowledge system, the SNP-Converter application contributes as a wrapper to semantic data integration and enrichment.

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Ontology Analysis on Complexity and Evolution Based on Conceptual Modelesults indicate that these metrics works well, and the biological process ontology is the most complex one from the view of complexity, and the molecular function ontology is the unsteadiest one from the view of evolution.

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On Querying OBO Ontologies Using a DAG Pattern Query Languagen of nodes, paths and subgraphs from DAGs, and permits construction of result structures by composing them. We show that using such a language on OBO ontologies (such as the gene ontology), we can express more complex and scientifically valuable queries.

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https://doi.org/10.1007/978-3-319-67693-7a metric based on Maximal Common Subgraph (MCS). By maintaining an inverted file that indexes all pathways in a database on their edges, our algorithm finds and ranks all pathways similar to the user input query pathway in time, which is linear in the total number of occurrences of the edges in common with the query in the entire database.