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Titlebook: Data Integration in the Life Sciences; 6th International Wo Norman W. Paton,Paolo Missier,Cornelia Hedeler Conference proceedings 2009 Spri

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发表于 2025-3-21 17:47:47 | 显示全部楼层 |阅读模式
书目名称Data Integration in the Life Sciences
副标题6th International Wo
编辑Norman W. Paton,Paolo Missier,Cornelia Hedeler
视频video
丛书名称Lecture Notes in Computer Science
图书封面Titlebook: Data Integration in the Life Sciences; 6th International Wo Norman W. Paton,Paolo Missier,Cornelia Hedeler Conference proceedings 2009 Spri
描述Data integration in the life sciences continues to be important but challe- ing. The ongoing development of new experimental methods gives rise to an increasingly wide range of data sets, which in turn must be combined to allow more integrative views of biological systems. Indeed, the growing prominence of systems biology, where mathematical models characterize behaviors observed in experiments of di?erent types, emphasizes the importance of data integration to the life sciences. In this context, the representation of models of biological behavior as data in turn gives rise to challenges relating to provenance, data quality, annotation, etc., all of which are associated with signi?cant research activities within computer science. The Data Integration in the Life Sciences (DILS) Workshop Series brings together data and knowledge management researchers from the computer s- ence research community with bioinformaticians and computational biologists, to improve the understanding of how emerging data integration techniques can address requirements identi?ed in the life sciences.
出版日期Conference proceedings 2009
关键词GFIND; HCI; biochemical systems; biological ontologies; biology; collaboration; data mining; genome annotat
版次1
doihttps://doi.org/10.1007/978-3-642-02879-3
isbn_softcover978-3-642-02878-6
isbn_ebook978-3-642-02879-3Series ISSN 0302-9743 Series E-ISSN 1611-3349
issn_series 0302-9743
copyrightSpringer-Verlag Berlin Heidelberg 2009
The information of publication is updating

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OpenFlyData: The Way to Go for Biological Data Integrations OpenFlyData (.), a simple user-led service providing . researchers with integrated access to distributed information. This is an exemplar lightweight solution to the problems of data integration, in which accurate and explicit data modelling enables high precision information retrieval.
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Dimiter R. Avresky,Michel Diaz,Eliezer Dekelvenance) as well as the evolution of ontologies, object sources, and annotations. Thus, it facilitates the identification of reliable annotations, e.g., for use in analysis applications. We evaluate our approach for functional protein annotations in Ensembl and Swiss-Prot using the Gene Ontology.
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https://doi.org/10.1007/978-1-4842-6921-3e effectiveness of our system by considering a number of queries involving SNP datasets. We show that most of the queries can be accelerated significantly by exploiting these three forms of parallelism.
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Estimating the Quality of Ontology-Based Annotations by Considering Evolutionary Changesvenance) as well as the evolution of ontologies, object sources, and annotations. Thus, it facilitates the identification of reliable annotations, e.g., for use in analysis applications. We evaluate our approach for functional protein annotations in Ensembl and Swiss-Prot using the Gene Ontology.
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Slicing through the Scientific Literatureies in response to keyword input from the user. Queries are presented in natural language, translated to formal query syntax and issued to a knowledge base of scientific literature, documents or aligned document segments. We describe the components of the system and exemplify using real-world examples.
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https://doi.org/10.1007/978-3-642-18436-9sult presented in this paper is a quantitative evaluation of their performance in two different situations: the integration and analysis of different metabolic pathways resources and the mapping of equivalent elements between the Gene Ontology and a nomenclature describing enzyme function.
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