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Titlebook: DNA Computing and Molecular Programming; 16th International C Yasubumi Sakakibara,Yongli Mi Conference proceedings 2011 Springer Berlin Hei

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Towards Domain-Based Sequence Design for DNA Strand Displacement Reactions,ation and dissociation. Here, considerations for domain-based sequence design are discussed, and heuristics are presented for the sequence design of domains. Based on these heuristics, a randomized algorithm is implemented for sequence design.
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https://doi.org/10.1007/978-3-662-05831-2physical reversibility corresponds to logically reversible computation, and arbitrarily little energy per computation step is required. Further, as a method of embedding logic control into chemical and biological systems, polymer-based chemical computation is significantly more efficient than geometry-free chemical reaction networks.
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Efficient Turing-Universal Computation with DNA Polymers,physical reversibility corresponds to logically reversible computation, and arbitrarily little energy per computation step is required. Further, as a method of embedding logic control into chemical and biological systems, polymer-based chemical computation is significantly more efficient than geometry-free chemical reaction networks.
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Synthesizing Minimal Tile Sets for Patterned DNA Self-assembly,use of a search tree in the lattice of partitions of the ambient rectangular grid, and an efficient bounding function to prune this search tree. Empirical data on the performance of the algorithm shows that it compares favourably to previously presented heuristic solutions to the problem.
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Operation of a DNA-Based Autocatalytic Network in Serum,ytic network in human serum and mouse serum. With the addition of sodium dodecyl sulfate to prevent degradation by nuclease activity, the network was found to operate successfully with both DNA and RNA catalysts.
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