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Titlebook: Computing and Combinatorics; 11th Annual Internat Lusheng Wang Conference proceedings 2005 Springer-Verlag Berlin Heidelberg 2005 Computer.

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,Thermal Conductivities of Ge–Sb–Te Alloys,r distance [6,11] or the gene matching computation between two genomes [3,10]. In this paper, we study the time complexity of the conserved interval distance computation considering duplicated genes using both those two strategies.
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,Thermal Conductivities of Ge–Sb–Te Alloys,For the off-line case, i.e., when the longest common subsequence is given as a linear graph with . vertices, we first present a polynomial .(..) time algorithm to compute its maximum nested loop. We then consider a slightly different problem – the Maximum Loop Chain problem and present a factor-2 ap
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,Thermal Conductivities of Ge–Sb–Te Alloys,gments in a permutation, that is, genes that are co-localised in several species, indicating that they remained grouped during evolution. A second largely studied problem related to gene order data is to compute a minimum scenario of reversals that transforms a signed permutation into another. Sever
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H. A. Braun,K. Schäfer,H. Wissingacteria. Further, HGT is a major confounding factor for any attempt to reconstruct bacterial phylogenies. As a result, detecting and reconstructing HGT events in groups of organisms has become a major endeavor in biology. The problem of detecting HGT events based on incongruence between a species tr
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K. Schäfer,H. A. Braun,L. Rempend a subclass of crossed pseudoknots. Compared with the Jens algorithm of .(..) time and .(..) space, this algorithm can predict more complex pseudoknots. Compared with the Rivas algorithm of .(..) time and .(..) space, this algorithm has the same power for the planar pseudoknots prediction.
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H. A. Braun,K. Schäfer,H. Wissinghas been shown that a collection of higher weight seeds have better sensitivity than a single lower weight seed at the same speed. However, huge memory requirements diminish the advantages of high weight seeds. This paper describes a two-stage extension method, which simulates high weight seeds with
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