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Titlebook: Computational Methods in Systems Biology; 11th International C Ashutosh Gupta,Thomas A. Henzinger Conference proceedings 2013 Springer-Verl

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书目名称Computational Methods in Systems Biology
副标题11th International C
编辑Ashutosh Gupta,Thomas A. Henzinger
视频video
概述Conference proceedings of the International Conference on Computational Methods in Systems Biology
丛书名称Lecture Notes in Computer Science
图书封面Titlebook: Computational Methods in Systems Biology; 11th International C Ashutosh Gupta,Thomas A. Henzinger Conference proceedings 2013 Springer-Verl
描述This book constitutes the proceedings of the 11th International Conference on Computational Methods in Systems Biology, CMSB 2013, held in Klosterneuburg, Austria, in September 2013. The 15 regular papers included in this volume were carefully reviewed and selected from 27 submissions. They deal with computational models for all levels, from molecular and cellular, to organs and entire organisms.
出版日期Conference proceedings 2013
关键词biomodel engineering; gene networks; metabolic data; spatial modeling; verification
版次1
doihttps://doi.org/10.1007/978-3-642-40708-6
isbn_softcover978-3-642-40707-9
isbn_ebook978-3-642-40708-6Series ISSN 0302-9743 Series E-ISSN 1611-3349
issn_series 0302-9743
copyrightSpringer-Verlag Berlin Heidelberg 2013
The information of publication is updating

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An Approximate Execution of Rule-Based Multi-level ModelsML-Rules, that allow a compact and concise description of these models. However, the more complex models become the more important is an efficient execution of these models. .-leaping algorithms can speed up the execution of biochemical reaction models significantly by introducing acceptable inaccur
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Computing Cumulative Rewards Using Fast Adaptive Uniformisation adaptive uniformisation method introduced by Mateescu approximates the probability by neglecting insignificant states, and has proven to be effective for quantitative analysis of stochastic models arising in chemical and biological applications. However, this method has only been formulated for the
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Linking Discrete and Stochastic Models: The Chemical Master Equation as a Bridge between Process Hitsometimes to an inhibitive extent. By building bridges in existing models, we can exploit the advantages of each, widening the range of analysis possible for larger, more detailed models of gene regulatory networks. In this paper, we create just such a link between Process Hitting [6,7,8], a recentl
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Modelling and Analysis of Phase Variation in Bacterial Colony Growthorming circular colonies on a flat medium. We explore the application of two different geometries, rectangular and circular, for modelling and analysing the colony growth in 2.5 dimensions. Our modelling paradigm is that of coloured stochastic Petri nets and we employ stochastic simulation in order
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Using Probabilistic Strategies to Formalize and Compare ,-Synuclein Aggregation and Propagation unden’s disease (PD). To the best of our knowledge, this is the first executable formal model of the propagation of .-syn aggregates through a neural network that is dynamically changing as a consequence of neuronal death. We then define different probabilistic strategies on top of our model to formaliz
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Statistical Model Checking Based Calibration and Analysis of Bio-pathway Modelsl-to-cell variability explicitly by using probability distributions to model initial concentrations and kinetic rate values. This implicitly defines a distribution over a set of ODE trajectories, the properties of which are to be characterized. The core component of our framework is an SMC procedure
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