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Titlebook: Computational Life Sciences II; Second International Michael R. Berthold,Robert C. Glen,Ingrid Fischer Conference proceedings 2006 Springer

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Grid Assisted Ensemble Molecular Dynamics Simulations of HIV-1 Proteases Reveal Novel Conformations on computational grids due to the difficulty in tracking large numbers of simulations. Using the Application Hosting Environment, a lightweight grid middleware solution, we present a simple way to construct chained ensembles of simulations seamlessly across multiple grid resources.
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Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clusteolynomials are given that comply with commonly used standard measures. The polynomial model based clustering is compared with standard clustering methods under different conditions and applied to a real gene expression data set. It shows significantly better results as noise and missing data are increased.
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https://doi.org/10.1007/978-3-322-95168-7ent the development of a regression model using .[2] – A technique that takes into account additional available information about the “system” which the model is to represent. The new approach shows substantial improvement over the “conventional” methods[3] against which it has been compared.
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Technik, Wirtschaft und Politik recombination operations (one of the three types of molecular operations that accomplish gene assembly) for a given gene during gene assembly. The characterization is based on spanning trees within a graph built upon the connected components in the breakpoint graph. We work in the abstract and more general setting of so-called legal strings.
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Strukturwandel internationaler Beziehungentions that are unavailable for both ‘in vitro’ and ‘in vivo’ experimental techniques. We investigated a trialanine peptide which is the one of the simplest examples of biomolecules, bearing the essential features of proteins.
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Set-Oriented Dimension Reduction: Localizing Principal Component Analysis Via Hidden Markov Models Expectation Maximization algorithm for its numerical optimization. We demonstrate the performance of the method on a generic 102-dimensional example, apply the new HMM-PCA algorithm to a molecular dynamics simulation of 12–alanine in water and interpret the results.
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