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Titlebook: Comparative Genomics; International Worksh Eric Tannier Conference proceedings 2010 Springer Berlin Heidelberg 2010 DCJ.DNA sequences.ances

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书目名称Comparative Genomics
副标题International Worksh
编辑Eric Tannier
视频videohttp://file.papertrans.cn/231/230911/230911.mp4
概述Up to date results.Fast conference proceedings.State-of-the-art report
丛书名称Lecture Notes in Computer Science
图书封面Titlebook: Comparative Genomics; International Worksh Eric Tannier Conference proceedings 2010 Springer Berlin Heidelberg 2010 DCJ.DNA sequences.ances
描述The complexity of genome evolution has given birth to exciting challenges for computational biologists. A various range of algorithmic, statistical, mathem- ical techniques to elucidate the histories of molecules are developed each year and many are presented at the RECOMB satellite workshop on Comparative Genomics. It is a place where scientists working on all aspects of comparative genomics can share ideas on the development of tools and their application to relevant questions. This volume contains the papers presented at RECOMB-CG 2010, held on October 9–11 in Ottawa. The ?eld is still ?ourishing as seen from the papers presented this year: many developments enrich the combinatorics of genome rearrangements, while gene order phylogenies are becoming more and more - curate, thanks to a mixing of combinatorial and statistical principles, associated with rapid and thoughtful heuristics. Several papers tend to re?ne the models of genome evolution, and more and more genomic events can be modeled, from single nucleotide substitutions in whole genome alignments to large structural mutations or horizontal gene transfers.
出版日期Conference proceedings 2010
关键词DCJ; DNA sequences; ancestral genomes; cancer genomics; comparative genomics; comparative tools; computati
版次1
doihttps://doi.org/10.1007/978-3-642-16181-0
isbn_softcover978-3-642-16180-3
isbn_ebook978-3-642-16181-0Series ISSN 0302-9743 Series E-ISSN 1611-3349
issn_series 0302-9743
copyrightSpringer Berlin Heidelberg 2010
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On Sorting Genomes with DCJ and Indels, algorithm to sort one genome into another one also using DCJ, insertions and deletions. The optimal sorting scenarios can have different compositions and we compare two types of sorting scenarios: one that maximizes and one that minimizes the number of DCJ operations with respect to the number of insertions and deletions.
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A Simple Measure of the Dynamics of Segmented Genomes: An Application to Influenza,nalysis of 530 complete genomes of the H1N1 subtype, sampled over eleven years, shows that the proposed measure explains 58% of the variance in the prevalence of H1 influenza in the US population. The proposed measure, denoted ., could therefore improve influenza surveillance programs at a minimal cost.
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Der Sozialsektor und seine Akteure, common for all of them, a perspective that allows us for the first time to theoretically compare their running times. The paper also proposes an improved framework that empirically speeds up all known algorithms.
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Zum Geltungsbereich sozio-kultureller Codes,exact NTRs built from the putative template motifs . and .. In this paper we describe an algorithm to solve this alignment problem in .(|... space and time. Our alignment algorithm is based on Fischetti et al.’s wrap-around dynamic programming.
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