Titlebook: Comparative Genomics; Methods and Protocol João Carlos Setubal,Peter F. Stadler,Jens Stoye Book 2024Latest edition The Editor(s) (if applic

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Fabiola M. Ribeiro,Stephen S. G. Fergusons the challenge of analyzing viral data. This chapter offers descriptions and protocols of some of the most important bioinformatic techniques for comparative analysis of viruses. The authors also provide comments and discussion on how viruses’ unique features can affect standard analyses and how to

Apogee

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Traditional GPCR Pharmacology and Beyondforts to characterize ancient linkage blocks called Nigon elements, which form central units of chromosome evolution. Fusions between Nigon elements have been demonstrated to impact recombination and speciation. Finally, multiple recent fusions between autosomal and the sex-linked Nigon element reve

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Studies in Systems, Decision and Controlses provide additional data such as InterPro domains, signal peptide and transmembrane domain predictions, and metabolic pathways. Comparative genomic analysis in VEuPathDB is facilitated by leveraging orthology to enable the transformation of results between organisms and identifying genes with spe

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The Theory of Gene Family Histories,ne some of the key mathematical insights and to discuss their implication for practical applications. In particular, we focus on tree-free methods, i.e., methods to infer orthology or horizontal gene transfer as well as gene trees, species trees, and reconciliations between them without using a prio

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