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Titlebook: Comparative Genomics; International Worksh Francesca D. Ciccarelli,István Miklós Conference proceedings 2009 Springer-Verlag Berlin Heidelb

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书目名称Comparative Genomics
副标题International Worksh
编辑Francesca D. Ciccarelli,István Miklós
视频video
丛书名称Lecture Notes in Computer Science
图书封面Titlebook: Comparative Genomics; International Worksh Francesca D. Ciccarelli,István Miklós Conference proceedings 2009 Springer-Verlag Berlin Heidelb
描述As genome-sequencing costs continue their downward spiral, sequencing of closely related organisms has become increasingly a?ordable. The growing amount of genomic data available demands for the constant development of computational tools to be applied in comparative genomics. The RECOMB Workshop on C- parative Genomics (RECOMB-CG) is devoted to bringing together scientists working on all aspects of comparative genomics, from computer scientists, ma- ematicians and statisticians working on novel computational approaches for genome analysis and comparison, to biologists applying these computational tools to study the structure and the evolution of prokaryotic and eukaryotic genomes. This volume contains the 19 papers presented at the 7th Annual RECOMB-CG workshop held during September 27–29, 2009 at the Renyi Institute, in Budapest, Hungary. The papers published in these proceedings were selected for oral p- sentation from 31 submissions from scientists around the world. Each paper was reviewed by at least three members of the Program Committee in a stringent and thoughtful peer-review process.
出版日期Conference proceedings 2009
关键词Promoter; ancestral genomes; calculus; co-evolution; comparative genomics; computational genomics; conserv
版次1
doihttps://doi.org/10.1007/978-3-642-04744-2
isbn_softcover978-3-642-04743-5
isbn_ebook978-3-642-04744-2Series ISSN 0302-9743 Series E-ISSN 1611-3349
issn_series 0302-9743
copyrightSpringer-Verlag Berlin Heidelberg 2009
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Parking Functions, Labeled Trees and DCJ Sorting Scenarios, This problem is related to the uniform generation of rearrangement scenarios, and the derivation of tests of statistical significance of the properties of these scenarios. Here we give an exact formula for the number of double-cut-and-join (DCJ) rearrangement scenarios of co-tailed genomes. We also
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Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction, set of rows that does not have the C1P, but every proper subset has the C1P. Such submatrices have been considered in comparative genomics applications, but very little is known about their combinatorial structure and efficient algorithms to compute them. We first describe an algorithm that detects
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Finding Nested Common Intervals Efficiently,as permutations or as sequences. Considering permutations, we give several algorithms whose running time depends on the size of the actual output rather than the output in the worst case. Indeed, we first provide a straightforward .(..) time algorithm for finding all nested common intervals. We redu
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Rearrangement Models and Single-Cut Operations,precisely defined, the general notion of a model remains undefined. In this paper, we give a formal set-theoretic definition, which allows us to investigate and prove relationships between distances under various existing and new models. We also initiate the formal study of single-cut operations by
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Inferring the Recent Duplication History of a Gene Cluster,ract evolutionary information from sequence data for such clusters are currently imperfect, in part because accurate sequence data are often lacking in these genomic regions, making the existing methods difficult to apply. We describe a new method for reconstructing the recent evolutionary history o
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