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Titlebook: Combinatorial Pattern Matching; 19th Annual Symposiu Paolo Ferragina,Gad M. Landau Conference proceedings 2008 Springer-Verlag Berlin Heide

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An(other) Entropy-Bounded Compressed Suffix Treeropy of the text does. Our development contains several novel ideas, such as compressing the longest common prefix information, and totally getting rid of the suffix tree topology, expressing all the suffix tree operations using range minimum queries and a new primitive called next/previous smaller value in a sequence.
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Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknotswe can guarantee polynomial run-time for a parameter which is small in practice. Our algorithm can be considered as a generalization of the algorithm of Jiang . [1] to arbitrary pseudoknots. In their absence, it gracefully degrades to the same polynomial algorithm. A prototypical implementation demonstrates the applicability of the method.
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Approximate String Matching with Address Bit Errorsontent itself (..). In this paper, we consider the case where bits of . may be erroneously flipped, either in a consistent or transient manner. We formally define the corresponding approximate pattern matching problems, and provide efficient algorithms for their resolution, while introducing some novel techniques.
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Yinghui Zhao,Shanshan Li,Jiang Wu the classical problem, achieving average case .(.log../.) time with any ., where . is the text size, . the pattern length, . the number of errors for edit distance, and . the alphabet size. Our experimental results show the practicality of this novel and promising research direction.
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