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Titlebook: Combinatorial Pattern Matching; Fifth Annual Symposi Maxime Crochemore,Dan Gusfield Conference proceedings 1994 Springer-Verlag Berlin Heid

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An alphabet-independent optimal parallel search for three dimensional pattern,able). Our main results concern the searching phase, however we present shortly a new approach to the second phase also. Usefullness of the dictionaries of basic factors (.‘s), see [7], in the computation of the three dimensional witness table is presented. The . approach gains simplicity at the exp
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978-3-540-58094-2Springer-Verlag Berlin Heidelberg 1994
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Sabrina Lai,Federica Leone,Corrado Zoppi the problem, such as the number of sequences to be analyzed, the length of the common subsequence, and the size of the alphabet. Lower bounds on the complexity of this basic problem imply lower bounds on a number of other sequence alignment and consensus problems. At issue in the theory of paramete
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https://doi.org/10.1007/978-3-642-29372-6al directed acyclic graph (DAG) containing all suboptimal alignments. In this paper, we propose a method that computes such a DAG in space . to the graph size. Let . be the area of the region of the dynamicprogramming matrix bounded by the suboptimal alignments and . the maximum width of that region
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Management and Industrial Engineering⊑ . when .(..,.., for all 1≤.≤.. A match implies all the . (without insertions and deletions) which are pairings of specific occurrances of . and .. A match (.) is . if there exists no longer match (.) such that all of the local alignments implied by (.) are contained in a local alignment implied by
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Smart Environment for Smart Citiesdered trees. The time complexity of this algorithm is .(¦..¦· s¦..· (deg(..) + deg(..)).), where ¦..¦ is the number of nodes in .. and deg(..) is the degree of .., .=1,2. The algorithm is faster than the best known algorithm for tree edit when deg(..) and deg(..) are smaller than the depths of .. an
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