Titlebook: Bioinformatics Research and Applications; 12th International S Anu Bourgeois,Pavel Skums,Alex Zelikovsky Conference proceedings 2016 Spring

Retrieval

An Efficient Algorithm for Finding All Pairs ,-Mismatch Maximal Common Substringscations in DNA sequence clustering and assembly. Due to errors made by sequencers, algorithms that can accommodate a small number of differences are of particular interest, but obtaining provably efficient solutions for such problems has been elusive. In this paper, we present a provably efficient a

多嘴多舌

objection

FSG: Fast String Graph Construction for De Novo Assembly of Reads Dataverlap-layout-consensus paradigm. In this paper, we explore a novel approach to compute the string graph, based on the FM-index and Burrows-Wheeler Transform (BWT). We describe a simple algorithm that uses only the FM-index representation of the collection of reads to construct the string graph, wit

高兴一回

OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Readsutation callers are developed, it is still difficult to detect mutations with low allele frequency even in exome sequencing. We expect that overlapping paired-end read information is effective for this purpose, but no mutation caller has modeled overlapping information statistically in a proper form

假设

consent

Irksome

HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecrotocols generate multi-kilobase reads longer than most transcripts allowing sequencing of complete haplotype isoforms. This allows partitioning the reads into two parental haplotypes. While the read length of the single-molecule protocols is long, the relatively high error rate limits the ability t

不能平静

Genome-Wide Structural Modeling of Protein-Protein Interactionsiology and medicine. The number of protein interactions in a genome is significantly larger than the number of individual proteins. Most protein structures have to be models of limited accuracy. The structure-based methods for building the network of protein interactions have to be fast and insensit

终点

鉴赏家

Differential Functional Analysis and Change Motifs in Gene Networks to Explore the Role of Anti-sensnscriptional control, especially in stress response processes. The aim of our work is to study gene networks, with the particularity to integrate in the process anti-sense transcripts. In this paper, we first present a method that highlights the importance of taking into account anti-sense data into