Titlebook: Bioinformatics Research and Applications; 9th International Sy Zhipeng Cai,Oliver Eulenstein,Daniel Schwartz Conference proceedings 2013 Sp

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https://doi.org/10.1007/978-3-322-85178-9does not exist a 2-reticulated network for the input trees. We present an algorithm computing a maximum subset of the species set so that a new set of subtrees can be combined into a 2-reticulated network.

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Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers,orks, which drive the whole system to initiate such transitions [1-4]. Examples for complex diseases are also provided to detect pre-disease stages (or detect early-signal of complex diseases) for which traditional methods failed, for demonstrating the effectiveness of this novel approach.

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Gene Regulatory Networks from Gene Ontology,h direct and transitive GO regulations are then used to construct a Gene Regulatory Network (GRN). The proposed approach is evaluated on seven E.coli sub-networks extracted from an existing known GRN. Our approach was able to detect the GRN with 85.77% precision, 55.7% recall, and 66.26% F1-score averaged across all seven networks.

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Reconstructing ,-Reticulated Phylogenetic Network from a Set of Gene Trees,does not exist a 2-reticulated network for the input trees. We present an algorithm computing a maximum subset of the species set so that a new set of subtrees can be combined into a 2-reticulated network.

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https://doi.org/10.1007/978-3-0348-6137-3e lists obtained from our method yielded more and better functional enrichment than those obtained from the conventional approach. Consequently, our method promises to be useful in designing cost-effective experiments with small sample sizes.