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Titlebook: Bioinformatics Research and Applications; Third International Ion Măndoiu,Alexander Zelikovsky Conference proceedings 2007 Springer-Verlag

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NEURONgrid: A Toolkit for Generating Parameter-Space Maps Using NEURON in a Grid Environment, submit a parameter-space analysis, monitor progress, and download results. NEURONgrid provides a user-friendly means for conducting intensive model exploration within the neurosciences. It is available for download at http://neurongrid.homeip.net.
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https://doi.org/10.1007/978-3-8349-9328-1cations, are aggregated/refined consistently with the tree. The user can interactively request further refinement or aggregation for different parts of the tree..The technique is implemented in Javascript on client site. It is a part of the new AJAX-based implementation of the NCBI Influenza Virus Resource.
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Estimating Bacterial Diversity from Environmental DNA: A Maximum Likelihood Approach, rather than using hand-fit models as in [2]. We assume four species abundance distributions, then maximize the likelihood of fitting the coverage depth at different positions of the consensus sequence provided in the Sargasso Sea sample. The resulting estimates match well with those obtained using less mathematically rigorous approaches.
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GFBA: A Biclustering Algorithm for Discovering Value-Coherent Biclusters, according to their similarity of expression under different conditions. However, it is often the case that some genes behave similarly only on a subset of conditions and their behavior is uncorrelated over the rest of the conditions. As traditional clustering methods will fail to identify such gene
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Significance Analysis of Time-Course Gene Expression Profiles,pendent gene expression profiles by autoregressive equations plus Gaussian noises, and time-independent gene expression profiles by constant numbers plus Gaussian noises. The statistical F-testing for regression analysis is used to calculate the confidence probability (significance level) that a tim
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