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Titlebook: Bioimage Data Analysis Workflows ‒ Advanced Components and Methods; Kota Miura,Nataša Sladoje Textbook‘‘‘‘‘‘‘‘ 2022 The Editor(s) (if appl

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期刊全称Bioimage Data Analysis Workflows ‒ Advanced Components and Methods
影响因子2023Kota Miura,Nataša Sladoje
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发行地址This book is open access, which means that you have free and unlimited access.The book explains computational methods in the context of biological questions.Provides real examples and hands–on experie
学科分类Learning Materials in Biosciences
图书封面Titlebook: Bioimage Data Analysis Workflows ‒ Advanced Components and Methods;  Kota Miura,Nataša Sladoje Textbook‘‘‘‘‘‘‘‘ 2022 The Editor(s) (if appl
影响因子.This open access textbook aims at providing detailed explanations on how to design and construct image analysis workflows to successfully conduct bioimage analysis. .Addressing the main challenges in image data analysis, where acquisition by powerful imaging devices results in very large amounts of collected image data, the book discusses techniques relying on batch and GPU programming, as well as on powerful deep learning-based algorithms. In addition, downstream data processing techniques are introduced, such as Python libraries for data organization, plotting, and visualizations. Finally, by studying the way individual unique ideas are implemented in the workflows, readers are carefully guided through how the parameters driving biological systems are revealed by analyzing image data. These studies include segmentation of plant tissue epidermis, analysis of the spatial pattern of the eye development in fruit flies, and the analysis of collective cell migration dynamics. .The presented content extends the .Bioimage Data Analysis Workflows. textbook (Miura, Sladoje, 2020), published in this same series, with new contributions and advanced material, while preserving the well-apprec
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A MATLAB Pipeline for Spatiotemporal Quantification of Monolayer Cell Migration, assay) is a commonly used . assay to assess collective cell migration. Our pipeline outputs traditional and spatiotemporal readouts that quantify the group migration properties and was previously used for a screen that included thousands of time-lapse sequences. You will learn how to execute the pi
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Kota Miura,Nataša SladojeThis book is open access, which means that you have free and unlimited access.The book explains computational methods in the context of biological questions.Provides real examples and hands–on experie
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Learning Materials in Bioscienceshttp://image.papertrans.cn/b/image/187137.jpg
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Batch Processing Methods in ImageJ,In this chapter you will learn how to execute a workflow on not only one image but on several images in ImageJ – a technique that is called “Batch Processing”. Various ways of doing this are possible in the Fiji distribution of ImageJ, and the characteristics of each and how-to are explained.
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