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Titlebook: Artificial Life Models in Software; Maciej Komosinski,Andrew Adamatzky Book 2009Latest edition Springer-Verlag London 2009 3D graphics.Avi

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Avidatings and protocols, a large array of measurement tools, and sophisticated methods to analyze and post-process experimental data. This chapter explains the general principles on which Avida is built, its main components and their interactions, and gives an overview of some prior research.
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Foundations of and Recent Advances in Artificial Life Modeling with Repast 3 and Repast Simphonycial life expands the “horizons of empirical research in biology beyond the territory currently circumscribed by life-as-we-know-it” to provide “access to the domain of life-as-it-could-be” [24]. Agent-based modeling and simulation (ABMS) are used to create computational laboratories that replicate
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From Artificial Life to In Silico Medicinehe ability to integrate that information into explanatory hypotheses of system-level behavior. Techniques from the Artificial Life community can aid in bridging this gulf by providing means for visualizing and instantiating mechanistic hypotheses. This will allow the development of in silico laborat
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Discrete Dynamics Labte Dynamical Networks in general and studying their behavior, both from the time-series perspective — space-time patterns, and from the state-space perspective — attractor basins. DDLab is relevant to research, applications, and education in the fields of complexity, self-organization, emergent phen
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Spatially Resolved Artificial Chemistryof artificial chemistry is a well-stirred tank reactor with no spatial representation in mind. Advanced method development in physical chemistry has made a class of models accessible to the realms of artificial chemistry that represent reacting molecules in a coarse-grained fashion in continuous spa
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