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Titlebook: Applications of Membrane Computing in Systems and Synthetic Biology; Pierluigi Frisco,Marian Gheorghe,Mario J. Pérez-Ji Book 2014 Springer

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Raghav Wusirika,David H. Ellisonsimulator of membrane systems with peripheral proteins. We present the methodology to investigate the role of estrogen in cellular mitosis and DNA damage and we use our statistical model checker to find the most appropriate time-dependent dosage of antagonist that should be used to minimize the uncontrolled replication of abnormal cells.
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Infobiotics Workbench: A P Systems Based Tool for Systems and Synthetic Biology,tems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for building, analysing and optimising large spatially discrete and stochastic models of multicellular systems makes it a useful, coherent and comprehensive in s
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Membrane System-Based Models for Specifying Dynamical Population Systems,lling population dynamics on real ecosystems. The semantics of these systems is captured by the Direct distribution based on Consistent Blocks Algorithm (DCBA), which has been engineered into software simulation tools. In particular, . (Membrane Computing Simulator) is a GUI developed in the framewo
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Biochemical Networks Discrete Modeling Inspired by Membrane Systems,molecular signaling cascades. The algorithm is presented with pseudocode along with an explanation of its implementation. We discuss several important extensions including: (i) a heap with special maintenance functions for sorting reaction waiting times, (ii) a nondeterminstic component for handling
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