Titlebook: Algorithms in Bioinformatics; 7th International Wo Raffaele Giancarlo,Sridhar Hannenhalli Conference proceedings 2007 Springer-Verlag Berli

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https://doi.org/10.1007/978-3-663-09590-3mental step towards predicting .-sheet topology. In this work we report a new strand pairing algorithm. Our algorithm attempts to mimic elements of the folding process. Namely, in addition to ensuring that the predicted hydrogen bonded strand pairs satisfy basic global consistency constraints, it ta

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Staatliche und parastaatliche Repressiontive disease association studies. However, while the selected informative tag SNPs may characterize the allele information of a target genomic region, they are not necessarily the ones directly associated with disease or with functional impairment. To address this limitation, we present a first inte

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https://doi.org/10.1007/978-3-663-00191-1ations, genome rearrangements, and horizontal transfer of genetic material. Evolutionary analysis of viral sequences is therefore a complicated matter for two main reasons: First, due to HGTs and recombinations, the right model of evolution is a network and not a tree. Second, due to genome rearrang

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Die Eigenschaften des Frequenzumformers,em is NP-hard and thus requires efficient and effective heuristics. Existing heuristics perform a stepwise search of the tree space, where each step is guided by an exact solution to an instance of a local search problem. We improve on the time complexity of the local search problem by a factor of .

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Sprachpolitik und Sprachenpolitikully tested in tasks of biosequence analysis and classification. Given a sequence . of . characters drawn from an alphabet ., the problem of extracting such a base from . had been previously solved in time .(|.|.. log.) and .(|.|.. log.), respectively in [9] and [7], through resort to the FFT-based

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