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Titlebook: Algorithms for Computational Biology; 4th International Co Daniel Figueiredo,Carlos Martín-Vide,Miguel A. Veg Conference proceedings 2017 S

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Ranking Vertices for Active Module Recovery Problemuggest to consider a problem of finding a vertex ranking instead of finding a single module. We also propose two algorithms for solving this problem: one that we consider to be optimal but computationally expensive for real-world networks and one that works close to the optimal in practice and is also able to work with big networks.
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Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bandsbiological sequence comparison. Fickett-MM was used to compare real DNA sequences whose sizes ranged from 10KBP (Thousands of Base Pairs) to 47MBP (Millions of Base Pairs), reaching a speedup of 59.60. in the 10MBP . 10MBP comparison when compared to CUDAlign stage 4.
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https://doi.org/10.1007/978-3-322-81806-5ide variants. We demonstrate linear-time identification of bundles in a bidirected graph. These two advances build on initial work on ultrabubbles in bidirected graphs, and define a more granular concept of genetic site.
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Daniel Figueiredo,Carlos Martín-Vide,Miguel A. VegIncludes supplementary material: .Includes supplementary material:
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