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Titlebook: Research in Computational Molecular Biology; 17th Annual Internat Minghua Deng,Rui Jiang,Xuegong Zhang Conference proceedings 2013 Springer

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Identification of Ultramodified Proteins Using Top-Down Spectra,fy complex PTM patterns. We propose a new algorithm, MS-Align-E, that identifies both expected and unexpected PTMs in ultramodified proteins. We demonstrate that MS-Align-E identifies many protein forms of histone H4 and benchmark it against the currently accepted software tools.
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Distinguishing between Genomic Regions Bound by Paralogous Transcription Factors,yc versus Mad2, using features that reflect the DNA binding specificities of putative co-factors. When applied to c-Myc/Mad2 DNA binding data, our algorithm can distinguish between genomic regions bound uniquely by c-Myc versus Mad2 with 87% accuracy.
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A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs,ce alignment with a consensus structure. We develop a scoring scheme combining classical stacking base pair energies to novel isostericity scales, and apply our techniques to correct point-wise errors in 5s rRNA sequences. Our results suggest that . is a promising algorithm to complement existing tools in the NGS error-correction pipeline.
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Shijian Chen,Anqi Wang,Lei M. Li in the. gene and in the regulation of genes of the retinoblastoma pathway such as . or cyclin .1 occur in a large percentage of tumors and have been well studied. Reintroduction or overexpression of genes suppressing proliferation or promoting apoptosis offers a potential for selective suicide of t
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Dong-Yeon Cho,Teresa M. Przytyckas human diseases, scientists have been fas- nated with the possibility of treating certain diseases by transducing foreign DNA into the affected cells. Initially, it was proposed that the foreign DNA could either replace defective nonfunctional genes, or code for therapeutic proteins. This concept h
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