Titlebook: Parasite Genomics Protocols; Christopher Peacock Book 2015Latest edition Springer Science+Business Media New York 2015 epigenome.genetic v

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The Eukaryotic Pathogen Databases: A Functional Genomic Resource Integrating Data from Human and Veterinary Parasites,ss have resulted in an explosion of large genome-scale data sets “big data.” While such data are readily available for download and personal use and analysis from a variety of repositories, often such analysis requires access to seldom-available computational skills. As a result a number of database

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From Sequence Mapping to Genome Assemblies, projects that were unthinkable just a few years ago. Although the scientific applications are diverse, e.g., new genome projects, gene expression analysis, genome-wide functional screens, or epigenetics—the sequence data are usually processed in one of two ways: sequence reads are either mapped to

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A Beginners Guide to Estimating the Non-synonymous to Synonymous Rate Ratio of all Protein-Coding Genes in a Genome,ng genes. It is widely used to study patterns of selection on protein genes on a genomic scale—from the small genomes of viruses, bacteria, and parasitic eukaryotes to the largest eukaryotic genomes. In this chapter we describe all the steps necessary to calculate the ./. of all the genes using at l

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Exploiting Genetic Variation to Discover Genes Involved in Important Disease Phenotypes,been a number of advances in which natural genetic diversity has been successfully utilized to untangle the often complex interactions between parasite and host. In this chapter we discuss various methods capable of exploiting this natural genetic variation to determine genes involved in phenotypes

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