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Titlebook: Engineering a Robust DNA Circuit for the Direct Detection of Biomolecular Interactions; Ang Yan Shan Book 2018 Springer Nature Singapore P

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书目名称Engineering a Robust DNA Circuit for the Direct Detection of Biomolecular Interactions
编辑Ang Yan Shan
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概述Offers readers essential insights into designing a localized DNA circuit to promote the rate of desired reaction over undesired leak reactions in the bulk solution.Proposes design concepts for individ
丛书名称Springer Theses
图书封面Titlebook: Engineering a Robust DNA Circuit for the Direct Detection of Biomolecular Interactions;  Ang Yan Shan Book 2018 Springer Nature Singapore P
描述.This book provides essential insights into designing a localized DNA circuit to promote the rate of desired hybridization reactions over undesired leak reactions in the bulk solution. The area of dynamic DNA nanotechnology, or DNA circuits, holds great promise as a highly programmable toolbox that can be used in various applications, including molecular computing and biomolecular detection. However, a key bottleneck is the recurring issue of circuit leakage. The  assembly of the localized circuit is dynamically driven by the recognition of biomolecules – a different approach from most methods, which are based on a static DNA origami assembly. The design guidelines for individual reaction modules presented here, which focus on minimizing circuit leakage, are established through NUPACK simulation and tested experimentally – which  will be useful for researchers interested in adapting the concepts for other contexts. In the closing section, the design concepts are successfully applied to the biomolecular sensing of a broad range of targets including the single nucleotide mutations, proteins, and cell surface receptors. .
出版日期Book 2018
关键词DNA Computing; Dynamic DNA Nanotechnology; DNA Nanodevices; Nupack Simulation; Biomolecular Sensing; Nucl
版次1
doihttps://doi.org/10.1007/978-981-13-2188-7
isbn_softcover978-981-13-4745-0
isbn_ebook978-981-13-2188-7Series ISSN 2190-5053 Series E-ISSN 2190-5061
issn_series 2190-5053
copyrightSpringer Nature Singapore Pte Ltd. 2018
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Angela Wigger,Hubert Buch-Hansenide mutations in DNA and RNA targets, aptamers to characterize thrombin binding, and antibodies to detect cell surface receptor dimers. We demonstrated through these studies that the split proximity circuit can be used for varied purposes, from simple end-point detection to semi-quantitative analysi
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Introduction,s was achieved by designing a target-responsive, self-contained DNA circuit to execute localized strand displacement reactions (Chaps. .–.) while minimizing circuit leakage through thermodynamics-driven design concepts (Chaps. . and .). We then demonstrated the applicability of the designed circuit,
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Modular Framework for Engineering a Self-contained DNA Circuit,concentration (50 nM–5 μM) in a single mixing step without any further washing. The formation of localized signal at the interaction site can be enhanced kinetically through the control of temperature and probe concentration. This work provides a basic general framework from which other circuit modu
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