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Titlebook: Computer Simulation of Biomolecular Systems; Theoretical and Expe Wilfred F. Gunsteren,Paul K. Weiner,Anthony J. Wil Book 1997 Springer Sci

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Systematic procedure for the development of accurate QM/MM model Hamiltonians mutagenesis techniques to help identify the key functional groups of the enzyme. Additionally, X-ray crystallography has advanced to the point where it is now feasible to determine the three-dimensional structure of enzymes, providing us with the ability to visualize the active site and confirm Emi
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Protein structure prediction by global energy optimizationttice, inventing a potential and then enjoying the luxury of always finding the global minimum of their energies as well as most of the other possible states for a chain of up to a hundred simplified residues [27,47]. The third school shares the impatience of minimalists, yet resists the temptation
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Adiabatic Processes. Laplace’s Theoremose a severe restriction on the integration timestep size: Δt must resolve the most rapid vibrational mode [3]. This generally limits Δt to the femtosecond (10. s) range and the trajectory length to the nanosecond (10. s) range. This feasible simulation range is still very short relative to motions of significant biological interest.
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https://doi.org/10.1007/978-1-349-81652-1mentally determined structure does not prove that this structure is correct, as the analysis of incorrectly determined experimental and deliberately misfolded protein structures shows [15,16]. It is necessary to include the protein—solvent interaction in the refinement process.
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nd elaborated in the second volume [2]. The primary emphasis is on the methodological aspects of simulations, although there are some chapters that present the results obtained for specific systems of biological interest. The focus of this volume has changed somewhat since there are several chapters
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