Titlebook: Computational Methods in Systems Biology; International Confer Muffy Calder,Stephen Gilmore Conference proceedings 2007 Springer-Verlag Ber

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https://doi.org/10.1007/978-1-4302-1605-6automata can be very helpful. The formalism focussed on in this paper starts from the logical description developed by R. Thomas to capture network structure and qualitative behavior of a system. Using the framework of timed automata, the analysis of the dynamics can be refined by adding a continuou

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https://doi.org/10.1057/9781137369413led by means of concurrent calculi. While the faithful modelling of bio-systems often requires multi-compartment semantics, the original Gillespie algorithm considers only one fixed-size volume. In this paper we introduce an extended formalisation of the above algorithm which preserves the original

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Andrei Panibratov,Marina Latukhar multiple generations. We have used a Monte Carlo algorithm to model the process of dot partitioning and dilution by cell mitosis. A Genetic Algorithm was used to compare simulated and experiment quantum dot distributions, which shows that the dot fluorescence is divided with a stochastic variation

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Spartan

Successes of the International Monetary Fundding the computation of the Markov model parameters is able to reconstruct the topology of the SLN model in polynomial time instead of exponential as in previous study [29]. To test the performance of the method, we apply it to different datasets (both synthetic and experimental) covering the expres

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The IMF Staff’s View of the World: The exploits process calculi as formal grounds, enjoys nice compositional properties, has a direct computational implementation that supports simulation trials, and, to our knowledge, represents the first process calculi based model of a presynaptic terminal. Simulation results have shown coherence with

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Finding Paths to Successful Transitions,ontinuous paradigms. Each perspective adds its contribution to the understanding of the system, thus the three approaches do not compete, but complement each other. We illustrate our approach by applying it to an extended model of the three stage cascade, which forms the core of the ERK signal trans