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Titlebook: Bioinformatics Research and Applications; 8th International Sy Leonidas Bleris,Ion Măndoiu,Jianxin Wang Conference proceedings 2012 Springe

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GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches,e duplication, gene duplication and loss, and deep coalescence. These problems are NP-complete, and consequently, they often are addressed by effective local search heuristics that perform a stepwise search of the tree space, where each step is guided by an exact solution to an instance of a local s
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POPE: Pipeline of Parentally-Biased Expression,case. Deviations from additive expectation are observable even at the level of gene expression, and identifying such instances is a prerequisite to the understanding of gene regulation and networks. Many biological studies employ mRNA-seq to identify instances where the overall and allelic expressio
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Madina Junussova,Aigul Beimishevastudy and the credible rooting of trees. Finally, we present detailed empirical studies based on real data sets demonstrating the performance of our novel RF measure, the efficiency of our linear time algorithm and the quality of determining optimal rootings of unrooted gene trees.
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