Titlebook: Algebraic Biology; Second International Hirokazu Anai,Katsuhisa Horimoto,Temur Kutsia Conference proceedings 2007 Springer-Verlag Berlin He

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Decentralized Water Allocation in Floridaodels of biological networks with favorable dynamic properties. We provide a geometric model for this class in the form of a toric algebraic variety described by a set of binomial polynomial equations, each of whose rational points corresponds to a nested canalyzing function. Toric varieties have a

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Natural Resource Management and Policyning of the living cell. A recent vivid direction of investigation in this area is devising models for and carrying out applications in biology/medicine and in other disciplines. We briefly present here the basic ideas of membrane computing, its interest for modeling in biology, as well as some appl

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Introduction: Why Decentralization Matters?,gulatory interactions, a state transition graph is constructed that captures the dynamics of the system. In the late eighties, Snoussi and Thomas extended the original framework by including singular values corresponding to interaction thresholds. They showed that these are needed for a refined unde

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Local Governance Capacities in Turkey,les is not feasible using existing technology. One of the methods for solving this problem uses the pure parsimony criterion, an approach known as Haplotype Inference by Pure Parsimony (HIPP). Initial work in this area was based on a number of different Integer Linear Programming (ILP) models and br

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https://doi.org/10.1007/978-3-030-02047-7s and answer queries using them? In this paper, we present a novel approach based on translation of generic reaction networks to Boolean .. The Boolean weighted MaxSAT instance is generated by encoding the equilibrium configurations of a reaction network by weighted boolean clauses. The important fe

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Decentralization and Governance Capacityel checking and dynamical systems to examine how a biochemical hybrid dynamical system can be made amenable to temporal analysis, even when the initial conditions and unknown parameters may only be treated as symbolic variables. This paper examines how to specialize this framework to metabolic contr

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Local Governance Capacities in Turkey,on is inspired by the chemical underpinning and the prevailing conceptualisation of .. To analyse the models, we use the recent notion of .. We exemplify our proposal with gene regulation and MAPK cascades, capturing basic as well as advanced issues such as . and . causation.