Peculate
发表于 2025-3-25 06:00:57
Disclosing Allostery Through Protein Contact Networks,e will demonstrate how a network-based representation of protein structure in terms of nodes (aminoacid residues) and edges (effective contacts between residues) is the natural language for getting rid of allosteric phenomena and, more in general, of protein structure/function relationships.
外面
发表于 2025-3-25 10:26:31
Probing Allosteric Mechanism with Long-Range Rigidity Transmission Across Protein Networks,ostery (RTA) algorithm. The RTA algorithm and method are designed to predict if mechanical perturbation of rigidity, for example, due to ligand binding, at one site of the protein can transmit and propagate across a protein structure and in turn cause a change in available conformational degrees of
军火
发表于 2025-3-25 14:39:20
Network Re-Wiring During Allostery and Protein-Protein Interactions: A Graph Spectral Approach,nd their repercussion on the overall protein organization (residue clustering) are highlighted. In this review, we adopt a graph spectral method to probe these subtle changes in a quantitative manner. Further, the power of this method is demonstrated for capturing re-ordering of side-chain interacti
土产
发表于 2025-3-25 16:09:24
Distal Regions Regulate Dihydrofolate Reductase-Ligand Interactions,n shown to exert their effects through a network of correlated amino acids and these effects have been investigated by NMR, protein dynamics, and analysis of coupled amino acids. The experimental methods and the findings that are reviewed here have broad implications for our understanding of enzyme
upstart
发表于 2025-3-25 20:09:26
Investigating Conformational Dynamics and Allostery in the p53 DNA-Binding Domain Using Molecular Scofactor recruitment. The protocol can be extended to any other cases of study. Indeed, it does not necessarily apply only to the study of DNA-induced effects, but more broadly to the investigation of long-range effects induced by a biological partner that binds to a biomolecule of interest.
Hormones
发表于 2025-3-26 02:30:32
Molecular Dynamics Simulation Techniques as Tools in Drug Discovery and Pharmacology : A Focus on Aovercome limitations of MD, such as enhanced sampling MD simulations. In this chapter, classical MD and enhanced sampling MD simulations will be described, along with their application to drug discovery, with a focus on allosteric drugs.
MURKY
发表于 2025-3-26 07:59:42
https://doi.org/10.1007/978-94-009-4281-3e will demonstrate how a network-based representation of protein structure in terms of nodes (aminoacid residues) and edges (effective contacts between residues) is the natural language for getting rid of allosteric phenomena and, more in general, of protein structure/function relationships.
Galactogogue
发表于 2025-3-26 09:46:45
https://doi.org/10.1007/b101090ostery (RTA) algorithm. The RTA algorithm and method are designed to predict if mechanical perturbation of rigidity, for example, due to ligand binding, at one site of the protein can transmit and propagate across a protein structure and in turn cause a change in available conformational degrees of
弯曲的人
发表于 2025-3-26 15:59:51
International Series in Outreach Scholarshipnd their repercussion on the overall protein organization (residue clustering) are highlighted. In this review, we adopt a graph spectral method to probe these subtle changes in a quantitative manner. Further, the power of this method is demonstrated for capturing re-ordering of side-chain interacti
insincerity
发表于 2025-3-26 17:25:57
https://doi.org/10.1057/9780230624931n shown to exert their effects through a network of correlated amino acids and these effects have been investigated by NMR, protein dynamics, and analysis of coupled amino acids. The experimental methods and the findings that are reviewed here have broad implications for our understanding of enzyme