miserly 发表于 2025-3-21 18:54:41
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An Exact Brownian Dynamics Method for Cell Simulation,copy and single particle tracking, evidences are accumulating that the cells may be taking advantage of intracellular spatial features to realize and optimize their functions. Computer simulation is a useful means to bridge the gap between the microscopic, physico-chemical picture of how macro-molec浪费时间 发表于 2025-3-22 07:48:20
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Functional Evolution of Ribozyme-Catalyzed Metabolisms in a Graph-Based Toy-Universe,y abstract and specific, have proven to be helpful in explaining properties and behavior observed in real world metabolic reaction networks, such as the occurrence of hub-metabolites. We propose here a more complex and intuitive graph-based model combined with an artificial chemistry. Instead of difRestenosis 发表于 2025-3-23 00:02:35
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A Language for Biochemical Systems,BS with features directed towards practical, large-scale applications, thus yielding LBS: a .. The two main extensions are expressions for modifying large complexes in a step-wise manner and parameterised modules with a notion of subtyping; LBS also has nested declarations of species and compartment榨取 发表于 2025-3-23 09:33:14
The Attributed Pi Calculus,ility, the calculus is parametrized with the language . which defines possible values of attributes. . can express polyadic synchronization as in pi@ and thus diverse compartment organizations. A non-deterministic and a stochastic semantics, where rates may depend on attribute values, is introduced.