palliative 发表于 2025-3-21 18:53:17
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Allgemeine physiologische Betrachtungen,triplets: For every . ≥ 3, if . is an incompatible set of more than . − 1 triplets over . labels, then some proper subset of . is incompatible. We show this bound is tight by exhibiting, for every . ≥ 3, a set of . − 1 triplets over . taxa such that . is incompatible, but every proper subset of . isVEN 发表于 2025-3-22 04:38:03
Reducing Problems in Unrooted Tree Compatibility to Restricted Triangulations of Intersection Graph continuing literature on graph triangulations, which has been exploited to create algorithms that are efficient in practice for a variety of Perfect-Phylogeny problems. Our reduction allows us to frame the compatibility problem as a minimal triangulation problem (in particular, as a chordal graph s种族被根除 发表于 2025-3-22 11:51:07
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Improved Lower Bounds on the Compatibility of Quartets, Triplets, and Multi-state Characters,triplets: For every . ≥ 3, if . is an incompatible set of more than . − 1 triplets over . labels, then some proper subset of . is incompatible. We show this bound is tight by exhibiting, for every . ≥ 3, a set of . − 1 triplets over . taxa such that . is incompatible, but every proper subset of . is为宠爱 发表于 2025-3-22 18:26:52
Preserving Inversion Phylogeny Reconstruction,reconstruct the ancestral gene orders in phylogenies of several .-Proteobacteria species and Burkholderia strains, respectively. We prove in addition that the large parsimony problem (where the phylogeny is output) remains NP-complete.Defiance 发表于 2025-3-22 23:52:02
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Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter, Bloom filter, with an additional structure to remove critical false positives. An assembly software implementing this structure, Minia, performed a complete . assembly of human genome short reads using 5.7 GB of memory in 23 hours.agitate 发表于 2025-3-23 07:55:36
Conference proceedings 2012ms and machine-learning methods that address important problems in molecular biology. The 35 full papers presented were carefully reviewed and selected from 92 submissions. The papers include algorithms for a variety of biological problems including phylogeny, DNA and RNA sequencing and analysis, protein structure, and others.