CAGE
发表于 2025-3-23 10:28:36
Copy-Number Evolution Problems: Complexity and Algorithms, of mutations are copy number aberrations, which alter the number of copies of genomic regions. The number of copies of each position along a chromosome constitutes the chromosome’s copy-number profile. Understanding how such profiles evolve in cancer can assist in both diagnosis and prognosis. We m
语言学
发表于 2025-3-23 17:43:27
,: A Fast and Memory-Efficient ,-mer Counter with GPU-Support,ome sequence. We present the open source .-mer counting software . that has been designed for the efficient counting of .-mers for .. Given the technology trend towards long reads of next-generation sequencers, support for large . becomes increasingly important. While existing .-mer counting tools s
影响
发表于 2025-3-23 21:24:09
Genome Rearrangements on Both Gene Order and Intergenic Regions,ive genes, although it was recently shown decisive for the accuracy of the inference methods [., .]. In this line, we define a new genome rearrangement model called wDCJ, a generalization of the well-known Double Cut and Join (or DCJ) model that allows for modifying both the gene order . the interge
bromide
发表于 2025-3-24 01:37:31
Better Identification of Repeats in Metagenomic Scaffolding,ng-read sequencing technologies, in metagenomic data intra-genome and, more importantly, inter-genome repeats continue to be a significant impediment to effective genome reconstruction. Detecting repeats in metagenomic samples is complicated by characteristic features of these data, primarily uneven
侵蚀
发表于 2025-3-24 02:57:47
A Better Scoring Model for De Novo Peptide Sequencing: The Symmetric Difference Between Explained aasses. The inverse problem is the .: Given all prefix and suffix masses, determine the string of amino acids. In biological reality, the given masses are measured in a lab experiment, and measurements by necessity are noisy. The (real, noisy) . therefore has a noisy input: a few of the prefix and su
coddle
发表于 2025-3-24 10:07:56
,,: Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Grained from molecular dynamics simulations. RNA molecules are well-suited for this representation due to their composition which is mainly modular and assessable by the secondary structure alone. Each adjacency matrix represents the interactions of . nucleotides. We then define transitions between sta
fringe
发表于 2025-3-24 12:11:54
Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis, of such analysis is a reduction to a maximum-weight connected subgraph problem. In particular, in analysis of metabolic networks a generalized maximum-weight connected subgraph (GMWCS) problem, where both nodes and edges are scored, naturally arises. Here we present the first to our knowledge pract
Esalate
发表于 2025-3-24 16:47:59
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蒙太奇
发表于 2025-3-24 19:38:02
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rheumatism
发表于 2025-3-25 02:29:05
https://doi.org/10.1007/978-3-663-09646-7reviously proposed greedy and approximation algorithms. We test our algorithm on real cancer data and show that our approach is viable and allows for the identification of subnetworks containing known cancer genes.